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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2974607_2976035_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2974607 - 2976035
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTCATCTAT
5'SS Class:
weak_major
3'SS Sequence:
ACTTCCATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
ACTTCCATATTA
Flanking Amino Acid:
KFIDTQTSQSKLSIFVNNSY
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.3
61.5
39.9
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
66.2
0.36
0.9
64.7
35.7
Minor 5ss
42.7
-0.8
2.9
56.7
41.9
Minor BPS
53.4
0.1
1.9
66.54
40.2

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135