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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2989376_2992757_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2989376 - 2992757
Intron Length:
3382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTCATCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCTAAATT
Flanking Amino Acid:
WSPKYNETFQFILSNEDKPG
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.8
77.1
31.4
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
68.1
0.65
1.6
82.85
39.2

Associated Gene:

Gene:
UNC13C
Ensembl Gene ID:
ENSAPLG00000007445
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007770
2892909 - 2993043
100135