Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3120080_3121459_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3120080 - 3121459

Intron Length:

1380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

ACATCTTGAATT

Flanking Amino Acid:

NIHLLRAPHAGKPKQLEEKM

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

87.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

77.4

0.62

78.6

33.6

Minor 5ss

36.1

-1.6

50.2

45.8

Minor BPS

62.3

0.46

1.4

71.91

39.4

Associated Gene:

Gene:

RSL24D1

Ensembl Gene ID:

ENSAPLG00000016498

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029591

3119865 - 3127830

7966