About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3121546_3122034_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3121546 - 3122034
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTATCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAATG
Flanking Amino Acid:
QKRQARFIMNRLKKNKELQK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.8
0.56
0.8
65.2
36
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
63.1
0.27
1.6
68.97
38.7

Associated Gene:

Gene:
RSL24D1
Ensembl Gene ID:
ENSAPLG00000016498
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029591
3119865 - 3127830
7966