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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3122945_3124347_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3122945 - 3124347
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTAATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
RKAAGKELTVDNSFEFEKRR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.4
0.73
0.9
77.7
34.4
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
RSL24D1
Ensembl Gene ID:
ENSAPLG00000016498
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029591
3119865 - 3127830
7966