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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3124462_3127572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3124462 - 3127572
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CATGATTTGACT
Flanking Amino Acid:
GVVFVRNDCKIFRFCKSKCH
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
78.5
0.64
1
78.5
33.7
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
52.8
0.17
1.7
68.41
42.8

Associated Gene:

Gene:
RSL24D1
Ensembl Gene ID:
ENSAPLG00000016498
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029591
3119865 - 3127830
7966