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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3132446_3135992_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3132446 - 3135992
Intron Length:
3547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGTGATTTAAGT
Flanking Amino Acid:
EEAKELAEKYGIPYFETSAA
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
82.2
0.73
0.8
77.1
31.6
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
53
0.17
1.9
73.23
43.7

Associated Gene:

Gene:
RAB27A
Ensembl Gene ID:
ENSAPLG00000002447
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002468
3132247 - 3140229
7983