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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3168703_3169282_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3168703 - 3169282
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
PNKRFQDGEQLQIFNTDSTC
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
74.1
0.54
0.8
66
34.5
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034332
3167608 - 3169438
1831