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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3174152_3176651_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3174152 - 3176651
Intron Length:
2500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCTGTATTC
Flanking Amino Acid:
QKYHHRNKREVV*
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
53.3
0.08
2.2
73.5
38.4

Associated Gene:

Gene:
CCPG1
Ensembl Gene ID:
ENSAPLG00000002976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003038
3174144 - 3193726
19583