Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3176741_3178708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3176741 - 3178708

Intron Length:

1968

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTTC

5'SS Class:

major

3'SS Sequence:

TTACTCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTTTTGTTTACT

Flanking Amino Acid:

QYDNSPQYGPSRPKRPSFTQ

Intron Amino Acid Position:

745

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

76.1

Major BPS

84.4

0.85

1.1

34.5

Major PPT

83.1

0.75

0.8

77.5

30.9

Minor 5ss

47.2

-0.3

2.4

61.9

42.9

Minor BPS

60.1

0.4

2.3

87.49

38.1

Associated Gene:

Gene:

CCPG1

Ensembl Gene ID:

ENSAPLG00000002976

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003038

3174144 - 3193726

19583