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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3180115_3181166_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3180115 - 3181166
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTGCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACAATTCTAATC
Flanking Amino Acid:
CQQEQGDKVGLLKGDLSTCL
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.7
44.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.5
0.55
0.9
73.8
36.8
Minor 5ss
37.5
-1.4
3.1
42.2
44.7
Minor BPS
46.2
-0.3
1.6
50.26
34.2

Associated Gene:

Gene:
CCPG1
Ensembl Gene ID:
ENSAPLG00000002976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003038
3174144 - 3193726
19583