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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3184987_3188989_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3184987 - 3188989
Intron Length:
4003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCATTTTAAAG
Flanking Amino Acid:
SQYAFSQPETVFSSQASNDE
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
51.2
-0.1
1.5
53.42
41.5

Associated Gene:

Gene:
CCPG1
Ensembl Gene ID:
ENSAPLG00000002976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003038
3174144 - 3193726
19583