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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3190175_3193666_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3190175 - 3193666
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGAT
5'SS Class:
major
3'SS Sequence:
TCTTCAACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AACTCTTCAACT
Flanking Amino Acid:
SCGWTVINHEGSDIETVTSE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.9
0.6
0.9
67.5
38
Minor 5ss
38.8
-1.3
3.5
57.9
46.7
Minor BPS
64.8
0.54
1.5
75.85
40.8

Associated Gene:

Gene:
CCPG1
Ensembl Gene ID:
ENSAPLG00000002976
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003038
3174144 - 3193726
19583