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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3201444_3202928_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3201444 - 3202928
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTCTTATAAAT
Flanking Amino Acid:
AFCQLELYAEGLQDYEAALK
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
62.6
0.28
1
60.8
40.1
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
52.7
0.16
1.7
73.89
36.3

Associated Gene:

Gene:
DNAAF4
Ensembl Gene ID:
ENSAPLG00000003228
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003314
3201334 - 3208781
7448