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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3204043_3204380_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3204043 - 3204380
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CCTTAATTAAAT
Flanking Amino Acid:
KNPDWLKDKGNKMFATGNYL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.1
0.5
0.9
71.1
39
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
52.2
0.15
1.9
71.49
44.8

Associated Gene:

Gene:
DNAAF4
Ensembl Gene ID:
ENSAPLG00000003228
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003314
3201334 - 3208781
7448