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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3204491_3205047_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3204491 - 3205047
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGATT
5'SS Class:
major
3'SS Sequence:
TGTATATTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTACTTCAAAA
Flanking Amino Acid:
RESRVAEEEEWLHKQAEARR
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
75.8
39.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
60.5
0.24
1.2
61.2
42.9
Minor 5ss
36.2
-1.6
3.7
56.4
48
Minor BPS
60.5
0.33
1.7
73.97
37.3

Associated Gene:

Gene:
DNAAF4
Ensembl Gene ID:
ENSAPLG00000003228
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003314
3201334 - 3208781
7448