About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3206157_3207446_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3206157 - 3207446
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATATTTCAAAC
Flanking Amino Acid:
KKYALEATMKLEEAERKRIE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68
0.41
1
63.8
41.2
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
49.6
-0
1.6
61.65
37.2

Associated Gene:

Gene:
DNAAF4
Ensembl Gene ID:
ENSAPLG00000003228
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003314
3201334 - 3208781
7448