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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3208401_3208658_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3208401 - 3208658
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGCTT
5'SS Class:
major
3'SS Sequence:
TATGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGCTCGTTAATT
Flanking Amino Acid:
NIFCTERYLKVSVPPFLFEA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
42.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.9
0.65
0.8
74.2
36.2
Minor 5ss
29.8
-2.3
3.7
46.2
49.1
Minor BPS
64
0.52
2.1
80.32
42.1

Associated Gene:

Gene:
DNAAF4
Ensembl Gene ID:
ENSAPLG00000003228
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003314
3201334 - 3208781
7448