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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3217589_3219392_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3217589 - 3219392
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
AAAATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGTATTTAAAA
Flanking Amino Acid:
DKKKRKANTQGSSFPPPSEY
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
64.5
0.33
1
60.1
45
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
64
0.44
1.6
73.54
38.1

Associated Gene:

Gene:
PYGO1
Ensembl Gene ID:
ENSAPLG00000027137
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020240
3216467 - 3219440
2974