About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3244026_3244939_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3244026 - 3244939
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
CTTTCTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTTTCTATT
Flanking Amino Acid:
IVGNSFIDAKGGSDLIINSY
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.3
0.73
0.7
77.9
29.2
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
48.9
-0
1.8
72.83
38.2

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073