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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3245106_3246055_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3245106 - 3246055
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAACATTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGCTTAACA
Flanking Amino Acid:
ILILIYRSKARKTSAPKPVQ
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63.8
0.31
1
58.5
42.2
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
74.7
0.77
1.7
83.03
38.2

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073