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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3247540_3251051_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3247540 - 3251051
Intron Length:
3512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTTTGTCTAACT
Flanking Amino Acid:
AGEWQVLHREGAMTMALLEN
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.9
0.52
0.8
65.7
35.7
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
56.3
0.27
2.1
80.09
42.2

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073