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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3251223_3252004_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3251223 - 3252004
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
GTTAGCCTAATA
Flanking Amino Acid:
PVVYHTTLPEAPSGPPVGVK
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
75.3
0.57
0.9
68.6
36.7
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
48.8
-0
2.1
65.76
40.6

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073