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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3279582_3280617_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3279582 - 3280617
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
DHVTQHTLEDVPLRAPEISL
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073