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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3285728_3286283_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3285728 - 3286283
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TACTTACCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTTACTTACCT
Flanking Amino Acid:
TVAMATLTVLAPPSFVEWPE
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
73.2
0.52
0.8
67.3
33.8
Minor 5ss
35.6
-1.6
3.1
39.3
46
Minor BPS
67.4
0.63
1.8
86
39.7

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073