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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3286443_3287591_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3286443 - 3287591
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTTCCTAACCA
Flanking Amino Acid:
PKPIISWSRLDHKSIDVFNT
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
62.8
0.29
1
59.3
36
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
56.6
0.2
2
69.2
43.4

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073