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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3289332_3321370_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3289332 - 3321370
Intron Length:
32039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTCCTTCAACT
Flanking Amino Acid:
LSQKSHLTLATISAFEVQPL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
82.4
0.73
0.7
81.1
29.7
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
62.9
0.48
1.5
76.15
40.4

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073