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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3321639_3321708_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3321639 - 3321708
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTACTTACA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
CTTTAGTGAACT
Flanking Amino Acid:
ASLLRVTSTSEPQDVTVSRK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.4
55.9
43
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
79.3
0.66
1.1
82.9
32.5
Minor 5ss
36.9
-1.5
2.9
47.7
41.1
Minor BPS
50.1
0.08
2.3
77.85
44.1

Associated Gene:

Gene:
PRTG
Ensembl Gene ID:
ENSAPLG00000003723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003859
3242495 - 3322567
80073