Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3340000_3343177_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3340000 - 3343177

Intron Length:

3178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GAGAATTGAAGT

Flanking Amino Acid:

VPMNGFAELYGSNGPQLFTV

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.8

82.3

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

82.8

0.74

0.7

77.1

24.9

Minor 5ss

33.1

-1.9

2.7

40.7

39.2

Minor BPS

42.2

-0.5

1.8

52.69

41.6

Associated Gene:

Gene:

NEDD4

Ensembl Gene ID:

ENSAPLG00000004254

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040492

3339747 - 3353596

13850

ENSAPLT00000004472

3339747 - 3385127

45381