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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3348933_3350334_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3348933 - 3350334
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
EFFRKKLKKQSDIPNRFEMK
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.81
0.7
84.8
29.6
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040492
3339747 - 3353596
13850
ENSAPLT00000004472
3339747 - 3385127
45381