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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3351257_3351346_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3351257 - 3351346
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
AAATACCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
AAATTATGAAAT
Flanking Amino Acid:
TDGRVFFINHNTKKTQWEDP
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.4
37.6
Major BPS
75.5
0.63
1
66
40.9
Major PPT
68.2
0.41
1
59.6
41.4
Minor 5ss
44.3
-0.6
2.4
57.5
40.7
Minor BPS
47.7
-0.1
1.7
64.34
38.8

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381