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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3356255_3356391_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3356255 - 3356391
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTCTATTTAAAG
Flanking Amino Acid:
ENLDNRDSPESWEIITEDEA
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
78.1
0.63
1
79
32.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
59.6
0.16
1.7
65.39
42.4

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381