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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3356510_3357054_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3356510 - 3357054
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
RRTQWKRPTAQDNVAVADMG
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.7
0.8
78.7
28.7
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381