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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3357225_3358089_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3357225 - 3358089
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTAAAA
5'SS Class:
major
3'SS Sequence:
TTGTACCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAAAA
Flanking Amino Acid:
ETTEQAEELEPGWIILDQPD
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
65.8
35.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.8
0.51
0.8
70.5
35.9
Minor 5ss
26
-2.8
3
30.7
42.8
Minor BPS
57.7
0.24
1.9
72.88
37.8

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381