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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3379065_3381749_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3379065 - 3381749
Intron Length:
2685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGGGTGTA
5'SS Class:
major
3'SS Sequence:
TTATTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATATTTTAACT
Flanking Amino Acid:
TIRKVSILVCVNPQKHRLLF
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.1
61.4
39.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.7
0.74
0.8
77.3
36.7
Minor 5ss
31.4
-2.1
3.5
39.8
46.2
Minor BPS
75.1
0.87
1.2
85.48
34.3

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381