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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3381847_3383541_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3381847 - 3383541
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
GLAKKDILGASDPYVKVTVY
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
NEDD4
Ensembl Gene ID:
ENSAPLG00000004254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004472
3339747 - 3385127
45381