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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3481659_3482784_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3481659 - 3482784
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCACGGCTC
5'SS Class:
major
3'SS Sequence:
TTTGTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
AAGTCATTGACA
Flanking Amino Acid:
EAAAARARGGGRLNAELEAK
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
67.7
40.2
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
85.1
0.79
0.8
82.1
34.6
Minor 5ss
23.5
-3.1
4.2
32.7
42.4
Minor BPS
60.7
0.33
1.6
66.95
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022154
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038718
3481570 - 3482944
1375