About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_348608_383442_F

Intron Information:

Intron Rank:
143751
Intron Class:
major
Intron Phase:
Intron Coordinates:
348608 - 383442
Intron Length:
34835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTTCCTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
77.4
0.62
0.9
70.4
36.3
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
47.9
-0
2.2
72.9
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042406
348286 - 384527
36242