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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3494303_3496971_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3494303 - 3496971
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCATTGCA
5'SS Class:
major
3'SS Sequence:
TCTTCTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACC
Flanking Amino Acid:
NKKSEGLQQEELEHLKRVQK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
67.9
37.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76
0.59
0.8
72.7
31
Minor 5ss
28.5
-2.5
2.9
34
41.2
Minor BPS
79
0.89
1.1
81.36
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030066
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046173
3494024 - 3501458
7435