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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3497107_3501380_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3497107 - 3501380
Intron Length:
4274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TATTTCTTTCGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
ELNKLKQSNKMHIEAAKMLS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66.9
0.38
1.7
73.6
41.5
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030066
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046173
3494024 - 3501458
7435