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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3503035_3504030_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3503035 - 3504030
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CCCCTTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCCCCTTATT
Flanking Amino Acid:
ASKLLGYLPRGILQGEDDIN
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.1
0.63
0.8
72.4
30.7
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
58.1
0.34
2
82.79
38

Associated Gene:

Gene:
MNS1
Ensembl Gene ID:
ENSAPLG00000006558
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028819
3502936 - 3511531
8596
ENSAPLT00000006823
3502936 - 3511144
8209