Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3504157_3505067_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3504157 - 3505067

Intron Length:

911

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTATTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TACTTCTTTATT

Flanking Amino Acid:

DRRRQFIADKERELEERQLE

Intron Amino Acid Position:

446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.1

29.5

Major BPS

83.9

0.84

73.9

41.3

Major PPT

85.1

0.79

0.7

81.7

28.7

Minor 5ss

31.5

-2.1

3.4

38.4

40.9

Minor BPS

62.9

0.49

1.6

76.1

41.2

Associated Gene:

Gene:

MNS1

Ensembl Gene ID:

ENSAPLG00000006558

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028819

3502936 - 3511531

8596