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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3505326_3507172_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3505326 - 3507172
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCATAAAA
Flanking Amino Acid:
QAETERKKEMAEIEKKIRQR
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.7
77.3
30.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
73.2
0.72
1.7
86.2
31.8

Associated Gene:

Gene:
MNS1
Ensembl Gene ID:
ENSAPLG00000006558
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006823
3502936 - 3511144
8209