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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3507560_3508371_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3507560 - 3508371
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTTACTTTG
5'SS Class:
weak_major
3'SS Sequence:
AAAACAACTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTTTACCT
Flanking Amino Acid:
RKIYEEDQMLLEKMRATQMY
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.07
1.3
57.3
42.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
47.7
-0.1
1.1
39.7
37.2
Minor 5ss
47.6
-0.2
2.5
61.4
38.2
Minor BPS
67.2
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
MNS1
Ensembl Gene ID:
ENSAPLG00000006558
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006823
3502936 - 3511144
8209