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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3507576_3508375_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3507576 - 3508375
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTTAC
5'SS Class:
major
3'SS Sequence:
TTACCTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTTTTACCT
Flanking Amino Acid:
IVRKIYEEDQMEKQLKLEKM
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
72.5
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
0.9
72.9
36.3
Minor 5ss
39.3
-1.2
2.7
50.1
39.4
Minor BPS
67.2
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
MNS1
Ensembl Gene ID:
ENSAPLG00000006558
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028819
3502936 - 3511531
8596