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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3566845_3566953_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3566845 - 3566953
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAG
5'SS Class:
major
3'SS Sequence:
CTTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AACTTCTTATTT
Flanking Amino Acid:
KPGEMPYVCQVCNYRSSAFS
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
63.4
42.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.8
0.74
0.7
81.7
28.7
Minor 5ss
39.7
-1.2
2.8
49.6
46.6
Minor BPS
59.4
0.37
1.6
70.76
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006903
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007207
3565058 - 3573677
8620