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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3567055_3567503_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3567055 - 3567503
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TCACTTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGCTTTTCACT
Flanking Amino Acid:
ESTHTPYESSTICKICELSF
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
36.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.8
0.67
0.8
73
37.1
Minor 5ss
41.4
-1
2.8
50.8
41.1
Minor BPS
57.5
0.32
1.7
76.33
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006903
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007207
3565058 - 3573677
8620