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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3584019_3587858_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3584019 - 3587858
Intron Length:
3840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TAACTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAACTTTTGACA
Flanking Amino Acid:
EISSSKPPSTYILNRVNFGS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76
28.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.3
0.5
1
68.5
41.6
Minor 5ss
39.7
-1.2
3.1
51.8
45.1
Minor BPS
60.1
0.31
1.2
64.82
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025642
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020079
3583440 - 3588004
4565