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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3630843_3631609_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3630843 - 3631609
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGACAT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TTATACACATCT
Flanking Amino Acid:
ELSDLLDFSAMFSPPVNSGK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.9
43.3
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
32.7
-2
3.5
48.2
47.4
Minor BPS
45.7
-0.2
2.2
71.78
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024067
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018964
3630768 - 3673546
42779