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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3760015_3761187_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3760015 - 3761187
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AAAAAAAAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
SMFASTFFMQDGTHNSSDLW
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
41.8
-0.4
1.1
26
33.2
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007225
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007562
3750728 - 3785957
35230